OpenCRAVAT App Store

Frequently Asked Questions


App store interface
oc store interface
Modules in the App store

Gene-level annotators: BioGRID, Cancer Gene Census, Cancer Gene Landscape, CIViC Gene, ClinGen Gene, COSMIC Gene, Essential Genes, ExAC Gene and CNV, gnomAD, GTEx, HaploReg, HGVS Format, InterPro, LINSIGHT, MuPIT, gnomAD Gene, Gene Ontology, HGDP, IntAct, LoFtool, MuPIT, NCBI Gene, NDEx, P(rec), p(HI), PubMed, RVIS, TARGET, UniProt, VEST

Variant-level annotators: ABraOM, BRCA1 Multiplex Assay, CHASMplus, CIViC, ClinVar, COSMIC, dbSNP, denovo-DB, ESP6500, FATHMM, Flanking Sequence, GERP++, GHIS, GRASP, GWAS Catalog, Mutation Assessor, MutPred, ncRNA, PharmGKB, Phast Cons, PhD-SNPg, PhyloP, Promoter IR, Pseudogene, Repeat Sequences, REVEL, Segway, Sift, SiPhy, 1000 Genomes, 1000 Genomes-Ad Mixed American, 1000 Genomes-African, 1000 Genomes-East Asian, 1000 Genomes-European, 1000 Genomes-South Asian, UK10k Cohorts, VEST, VISTA Enhancer Browser

Input format converters: TSV, VCF, Ancestry.com, 23andMe

Output format reporters: Text format, Excel, TSV, CSV, Annotated VCF