Resources | OpenCRAVAT
Ways to run OpenCRAVAT
- Local laptop or desktop - Documentation
- On cloud platforms
- Snakemake workflow management
- Docker
- Pip
- BioConda
- GenePattern
Example files
Contribute to OpenCRAVAT
- GitHub issues for bug reporting
- GitHub Discussions for feature requests and discussion
- Developer tutorial for instructions on adding new modules
How to Cite
Pagel KA et al. Integrated Informatics Analysis of Cancer-Related Variants. JCO Clinical Cancer Informatics 2020 4, 310-317.
OpenCRAVAT users are encouraged to cite individual annotations used in their study analysis.
Funding
OpenCRAVAT is supported by National Cancer Institute ITCR grant U24CA258393.